Mathias - Data analyst I.A.

Computer skills
- Unix: C, C++, Java, Perl, Awk, Lisp, R, GPU parallell programming using C/CUDA, OpenMP, C++ Pthreads.
July ’08 & Sept ’09: (Advanced) Object Oriented Programming in C++ (Orsys, la Défence, Paris, France)
- Conception and software development: Eclipse – Cvs, Svn – MySql DB – project management with Redmine
(Ruby-gems) - Institut Pasteur.
Examples of developped software:
• JAVA: MascotDatReader – analysis and interpretation of mass spectrometry - Mascot search results (version 0.01 using the MascotDatFile library; version 0.02-0.05 using the MatrixScience MsParser). Collaboration Univ. Evry, France.
• JAVA: MaldiTool – analysis and interpretation of LC/Maldi-MS data for quantification. Collaboration Univ. Tuebingen, Germany.
• JAVA: Madi2Orbi – reformatting tool for Maldi-MS data for input compatible with Orbitrap analysis tools. CollaborationUniv. Tuebingen, Germany.
• C++: multiple alignment of LC-MS/MS experiments. Visualisation of results. Institut Pasteur.
• PERL: Comparison through alignment of genomic sequences for detection of syntenic regions using homology. Ecole Normale Supériere & Univ. Basel.
• ANSI-C: counting and statistical analysis of genomic regulatory motives. Inria and Univ. Bordeaux I, France.
- Hardware management, installation, updating and maintenance of High-Performance Computing servers and user-workstations: Linux RedHat, Mac-OSX, FreeBSD 8.x./9.0, SunOS 5.11/OpenSolaris/OpenIndiana b147. Network Security. Cluster Management tools: PBS/SGE, Pvfs2.
- Maple and Mathematica for symbolic computing,
- Unix (Linux, BSD, Mac-OS X, SunOS) System Administration.
- Windows environments and application suites (MS-Visual Studio 08, Ms-Office suite).

Languages :
• French–English–Dutch: read–spoken–written.
• German: good level
• Spanish: notions.